Intercellular ligand-receptor interactions for 38 ligands from a single cell RNA-seq cluster. — pbmc_small_nested

A dataset containing ligand-receptor interactions within a sample. There are 38 ligands from a single cell cluster versus 35 receptors in 6 other clusters.

data(pbmc_small_nested_interactions)

Format

A `tibble` containing 100 rows and 9 columns. Cells are a subsample of the PBMC dataset of 2,700 single cells. Cell interactions were identified with `SingleCellSignalR`.

sample: sample identifier
ligand: cluster and ligand identifier
receptor: cluster and receptor identifier
ligand.name: ligand name
receptor.name: receptor name
origin: cluster containing ligand
destination: cluster containing receptor
interaction.type: type of interation, paracrine or autocrine
LRscore: interaction score

Source

https://satijalab.org/seurat/v3.1/pbmc3k_tutorial.html

Value

`tibble`