Adds a layers of texts above the heatmap tiles to a `InputHeatmap`, that on evaluation creates a `ComplexHeatmap`

Source: R/methods.R

layer_text() from a `InputHeatmap` object, adds a text annotation layer.

layer_text(.data, ..., .value, .size = NULL)

# S4 method for class 'InputHeatmap'
layer_text(.data, ..., .value, .size = NULL)

Source

[Mangiola and Papenfuss., 2020](https://joss.theoj.org/papers/10.21105/joss.02472)

Arguments

.data

A `InputHeatmap`

...

Expressions that return a logical value, and are defined in terms of the variables in .data. If multiple expressions are included, they are combined with the & operator. Only rows for which all conditions evaluate to TRUE are kept.

.value

A column name or character string.

.size

A column name or a double. The size of the elements of the layer.

Value

A `InputHeatmap` object that gets evaluated to a `ComplexHeatmap`

A `InputHeatmap` object that gets evaluated to a `ComplexHeatmap`

Details

maturing

It uses `ComplexHeatmap` as visualisation tool.

References

Mangiola, S. and Papenfuss, A.T., 2020. "tidyHeatmap: an R package for modular heatmap production based on tidy principles." Journal of Open Source Software. doi:10.21105/joss.02472.

Examples


library(dplyr)
#> 
#> Attaching package: ‘dplyr’
#> The following objects are masked from ‘package:stats’:
#> 
#>     filter, lag
#> The following objects are masked from ‘package:base’:
#> 
#>     intersect, setdiff, setequal, union

hm = 
  tidyHeatmap::N52 |>
  mutate(my_text = "t") |>
  tidyHeatmap::heatmap(
    .row = symbol_ct,
    .column = UBR,
    .value = `read count normalised log`
) 

hm |> layer_text(.value = "a")

hm |> layer_text(.value = my_text)