as_SummarizedExperiment

as_SummarizedExperiment() creates a `SummarizedExperiment` object from a `tbl` or `tidybulk` tbl formatted as | <SAMPLE> | <TRANSCRIPT> | <COUNT> | <...> |

as_SummarizedExperiment(
  .data,
  .sample = NULL,
  .transcript = NULL,
  .abundance = NULL
)

# S4 method for class 'spec_tbl_df'
as_SummarizedExperiment(
  .data,
  .sample = NULL,
  .transcript = NULL,
  .abundance = NULL
)

# S4 method for class 'tbl_df'
as_SummarizedExperiment(
  .data,
  .sample = NULL,
  .transcript = NULL,
  .abundance = NULL
)

# S4 method for class 'tidybulk'
as_SummarizedExperiment(
  .data,
  .sample = NULL,
  .transcript = NULL,
  .abundance = NULL
)

Arguments

.data

A tibble

.sample

The name of the sample column

.transcript

The name of the transcript/gene column

.abundance

The name of the transcript/gene abundance column

Value

A `SummarizedExperiment` object

A `SummarizedExperiment` object

A `SummarizedExperiment` object

A `SummarizedExperiment` object