Get DESCRIPTION from gene SYMBOL for Human and Mouse

describe_transcript

describe_transcript(.data, .transcript = NULL)

# S4 method for class 'spec_tbl_df'
describe_transcript(.data, .transcript = NULL)

# S4 method for class 'tbl_df'
describe_transcript(.data, .transcript = NULL)

# S4 method for class 'tidybulk'
describe_transcript(.data, .transcript = NULL)

.describe_transcript_SE(.data, .transcript = NULL)

# S4 method for class 'SummarizedExperiment'
describe_transcript(.data, .transcript = NULL)

# S4 method for class 'RangedSummarizedExperiment'
describe_transcript(.data, .transcript = NULL)

Arguments

.data: A tt or tbl object.
.transcript: A character. The name of the gene symbol column.

Value

A tbl

A consistent object (to the input) including additional columns for transcript symbol

A `SummarizedExperiment` object

A consistent object (to the input) including additional columns for transcript symbol

Examples


describe_transcript(tidybulk::se_mini)
#> 
#> 
#> class: SummarizedExperiment 
#> dim: 527 5 
#> metadata(0):
#> assays(1): count
#> rownames(527): ABCB4 ABCB9 ... ZNF324 ZNF442
#> rowData names(2): entrez description
#> colnames(5): SRR1740034 SRR1740035 SRR1740043 SRR1740058 SRR1740067
#> colData names(5): Cell.type time condition days dead