Intercellular ligand-receptor interactions for 38 ligands from a single cell RNA-seq cluster.
Source:R/data.R
pbmc_small_nested_interactions.RdA dataset containing ligand-receptor interactions within a sample. There are 38 ligands from a single cell cluster versus 35 receptors in 6 other clusters.
Usage
data(pbmc_small_nested_interactions)Format
A `tibble` containing 100 rows and 9 columns. Cells are a subsample of the PBMC dataset of 2,700 single cells. Cell interactions were identified with `SingleCellSignalR`.
- sample
sample identifier
- ligand
cluster and ligand identifier
- receptor
cluster and receptor identifier
- ligand.name
ligand name
- receptor.name
receptor name
- origin
cluster containing ligand
- destination
cluster containing receptor
- interaction.type
type of interation, paracrine or autocrine
- LRscore
interaction score