Package index • tidyseurat

All functions

aggregate_cells(<Seurat>): Aggregate cells

arrange(<Seurat>): Order rows using column values

as_tibble(<Seurat>): Coerce lists, matrices, and more to data frames

bind_rows(<Seurat>) bind_cols(<Seurat>): Efficiently bind multiple data frames by row and column

cell_type_df: Cell types of 80 PBMC single cells

count(<Seurat>) add_count(<Seurat>): Count the observations in each group

distinct(<Seurat>): Keep distinct/unique rows

extract(<Seurat>) superseded: Extract a character column into multiple columns using regular expression groups

filter(<Seurat>): Keep rows that match a condition

print(<Seurat>): Printing tibbles

full_join(<Seurat>): Mutating joins

ggplot(<Seurat>): Create a new ggplot from a tidyseurat

glimpse(<tidyseurat>): Get a glimpse of your data

group_by(<Seurat>): Group by one or more variables

group_split(<Seurat>) experimental: Split data frame by groups

inner_join(<Seurat>): Mutating joins

join_features(<Seurat>): join_features

join_transcripts(): (DEPRECATED) Extract and join information for transcripts.

left_join(<Seurat>): Mutating joins

mutate(<Seurat>): Create, modify, and delete columns

nest(<Seurat>): Nest rows into a list-column of data frames

pbmc_small_nested_interactions: Intercellular ligand-receptor interactions for 38 ligands from a single cell RNA-seq cluster.

pivot_longer(<Seurat>): Pivot data from wide to long

plot_ly(): Initiate a plotly visualization

pull(<Seurat>): Extract a single column

rename(<Seurat>): Rename columns

return_arguments_of(): returns variables from an expression

right_join(<Seurat>): Mutating joins

rowwise(<Seurat>): Group input by rows

sample_n(<Seurat>) sample_frac(<Seurat>) superseded: Sample n rows from a table

select(<Seurat>): Keep or drop columns using their names and types

separate(<Seurat>) superseded: Separate a character column into multiple columns with a regular expression or numeric locations

slice(<Seurat>) slice_sample(<Seurat>) slice_head(<Seurat>) slice_tail(<Seurat>) slice_min(<Seurat>) slice_max(<Seurat>): Subset rows using their positions

summarise(<Seurat>) summarize(<Seurat>): Summarise each group down to one row

tbl_format_header(<tidySeurat>) experimental: Format the header of a tibble

tidy(): tidy for `Seurat`

unite(<Seurat>): Unite multiple columns into one by pasting strings together

unnest(<tidyseurat_nested>) unnest_seurat(): Unnest a list-column of data frames into rows and columns